spell.yeastgenome.orgSPELL - S. cerevisiae

Blog Download Help YeastMine Get Data Home Analyze Gene Lists BLAST Fungal BLAST GO Term Finder GO Slim Mapper Pattern Matching Design Primers Restriction Mapper Sequence Download Genome Browser BLAST Fungal BLAST Gene / Sequence Resources Reference Genome Download Genome Genome Snapshot Chromosome History Systematic Sequencing Table Original Sequence Papers Strains and species Variant Viewer Align Strain Sequences Resources UniProtKB (EBI) InterPro (EBI) HomoloGene (NCBI) YGOB (Trinity College) Function GO GO Term Finder GO Slim Mapper GO Slim Mapping File Expression Biochemical Pathways Phenotypes Browse all phenotypes Interactions YeastGFP Resources GO Consortium BioGRID (U. Toronto) Literature Full-text Search New Yeast Papers YeastBook Genome-wide Analysis Papers Resources PubMed (NCBI) PubMed Central (NCBI) Google Scholar Community Community Forum Colleague Information Find a Colleague Add or Update Info Find a Yeast Lab Career Resources Meetings Nomenclature Submit a Gene Registration Gene Registry Nomenclature Conventions Global Gene Hunter Methods and Reagents Strains and Constructs Reagents Protocols and Methods Find a Clone Historical Data Physical & Genetic Maps Genetic Maps Sequence Gene Summary Paragraphs Submit Data Wiki Resources ’logoimg’, :id = ’logo’ ) %SPELL - S. cerevisiae New Search Dataset Listing Show Expression Levels Download Expression Data About the Website SPELL Version 2.0.3 SPELL (Yeast) Gene Name(s): # Results: 20 50 100 Options for Filtering Results by Dataset Tags Dataset Tags Select: amino acid metabolism environmental-sensing nutrient utilization response to unfolded protein amino acid utilization evolution organelles, biogenesis, structure, and function RNA catabolism carbon utilization fermentation osmotic stress RNA processing and metabolism cell aging filamentous growth oxidative stress signaling cell cycle regulation flocculation oxygen level alteration sporulation cell morphogenesis genetic interaction phosphorus utilization starvation cell wall organization genome variation ploidy stationary phase entry cellular ion homeostasis heat shock prions stationary phase maintenance chemical stimulus histone modification protein dephosphorylation stress chromatin organization lipid metabolism protein glycosylation sulfur utilization chromosome segregation mating protein modification synthetic biology cofactor metabolism metabolism protein phosphorylation transcription colony morphology metabolism and metabolic regulation protein structure and folding transcriptional regulation cytoskeleton and molecular motors metal or metalloid ion stress protein trafficking, localization and degradation translational regulation diauxic shift metal or metalloid ion utilization proteolysis ubiquitin or ULP modification disease mitotic cell cycle QTLs DNA damage stimulus mRNA processing radiation DNA replication, recombination and repair nitrogen utilization respiration SPELL (Serial Pattern of Expression Levels Locator) is a query-driven search engine for large gene expression microarray compendia. Given a small set of query genes, SPELL identifies which datasets are most informative for these genes, then within those datasets additional genes are identified with expression profiles most similar to the query set. This instance of SPELL currently contains 752 datasets representing 15475 total arrays from 576 published studies. To use SPELL, simply enter a set of S. cerevisiae gene names (defined by SGD ) into the text box above and then click the "Search" button. Please note that the "Filtering Results by Dataset Tags" feature simply filters the datasets for display purposes. It does not affect the SPELL search algorithm. Need help getting started with SPELL? Check out the video tutorial . Additional help may be obtained by hovering over the help icon wherever you see it. SPELL Version 2.0.3. Hibbs MA, Hess DC, Myers CL, Huttenhower C, Li K and Troyanskaya OG (2007) Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinformatics 23: 2692-9 Contact: sgd-helpdesk@lists.stanford.edu SGD Home About Blog Site Map Help © Stanford University, Stanford, CA...